Publications

Articles de périodiques scientifiques

Taseen R, Ethier J-F (2021) Expected clinical utility of automatable prediction models for improving palliative and end-of-life care outcomes: Toward routine decision analysis before implementation. Journal of the American Medical Informatics Association 28:2366–2378. Cite
DeCunha JM, Villegas F, Vallieres M, Torres J, Camilleri-Broët S, Enger SA (2021) Patient-specific microdosimetry: a proof of concept. Physics in Medicine & Biology 66:185011. Cite
Cumyn A, Dault R, Barton A, Cloutier A-M, Ethier J-F (2021) Citizens, Research Ethics Committee Members and Researchers’ Attitude Toward Information and Consent for the Secondary Use of Health Data: Implications for Research Within Learning Health Systems. J Empir Res Hum Res Ethics 16:165–178. https://doi.org/10.1177/1556264621992214 Cite Download
Cumyn A, Barton A, Dault R, Safa N, Cloutier A-M, Ethier J-F (2021) Meta-consent for the secondary use of health data within a learning health system: a qualitative study of the public's perspective. BMC Med Ethics 22:81. Cite Download
Lachance O, Goyer F, Adhikari NKJ, Masse M-H, Bilodeau J-F, Lamontagne F, Leclair M-A (2021) High-dose vitamin-C induced prolonged factitious hyperglycemia in a peritoneal dialysis patient: a case report. Journal of Medical Case Reports 15:297. Cite
Olivier Grenier, Adrien Barton (2021) Vers une ontologie dispositionnelle du risque. Lato Sensu 8:57–69. https://doi.org/10.20416/LSRSPS.V8I2.6 Cite Download
Lebrun A, Cloutier-Langevin C, Plante A-S, Savard C, Weisnagel SJ, Robitaille J, Camirand Lemyre F, Morisset A-S (2021) Trimester-Specific and Total Gestational Weight Gain in Two Consecutive Pregnancies. Journal of Obstetrics and Gynaecology Canada (JOGC) 43:483–489 Cite Download
Barton A, Cumyn A, Dault R, Ethier J-F (2021) Gift, Reciprocity and Learning Health Systems. Am J Bioeth 21:91–93. Cite
Loignon-Houle F, Gundacker S, Toussaint M, Camirand Lemyre F, Auffray E, Fontaine R, Charlebois SA, Lecoq P, Lecomte R (2021) DOI estimation through signal arrival time distribution: a theoretical description including proof of concept measurements. Physics in Medicine &$\mathsemicolon$ Biology 66:095015. Cite Download
Camirand Lemyre F, Chalifoux K, Desharnais B, Mireault P (2021) Squaring Things Up with R2: What It Is and What It Can (and Cannot) Tell You. Journal of Analytical Toxicology 46:443–448. Cite Download
Ecarot T, Fraikin B, Lavoie L, McGilchrist M, Ethier J-F (2021) A Sensitive Data Access Model in Support of Learning Health Systems. Computers 10:25. https://doi.org/10.3390/computers10030025 Cite Download
Le Bihan B, Barton A (2021) Analytic Metaphysics Versus Naturalized Metaphysics: The Relevance of Applied Ontology. Erkenntnis 86:21–37. Cite
Toyoshima F (2021) Roles and their three facets: A foundational perspective. Applied Ontology 16:161–192. https://doi.org/10.3233/AO-210244 Cite
Letarte L, Gagnon P, McKay R, Quesnel-Vallée A, Waygood EOD, Lebel A, Vanasse A, Bartlett G, Blais L, Buckeridge D, Choinière M, Hudon C, Lacasse A, Lamarche B, Quesnel-Vallée A, Roberge P, Émond V, Pomey M-P, Benigeri M, Cloutier A-M, Dorais M, Courteau J, Courteau M, Plante S, Cambon P, Giguère A, Leroux I, St-Laurent D, Roy D, Borja J, Néron A, Landry G, Ethier J-F, Dault R, Côté-Marcil M-A, Tremblay P, Quirion S, on behalf of the TorSaDE Cohort Working Group (2021) Examining longitudinal patterns of individual neighborhood deprivation trajectories in the province of Quebec: A sequence analysis application. Social Science & Medicine 288:113695. https://doi.org/https://doi.org/10.1016/j.socscimed.2021.113695 Cite
Ethier J-F, Goyer F, Fabry P, Barton A (2021) The prescription of drug ontology 2.0 (PDRO): More than the sum of its parts. International Journal of Environmental Research and Public Health 18. https://doi.org/10.3390/ijerph182212025 Cite
Camirand Lemyre F, Decrouez G (2021) Nonparametric recursive estimation of the copula. Statistics & Probability Letters 168:108929. https://doi.org/https://doi.org/10.1016/j.spl.2020.108929 Cite Download
Vincenot M, Coulombe-Lévêque A, Sean M, Camirand Lemyre F, Gendron L, Marchand S, Léonard G (2021) Development and Validation of a Predictive Model of Pain Modulation Profile to Guide Chronic Pain Treatment: A Study Protocol. Frontiers in Pain Research 2. https://doi.org/10.3389/fpain.2021.606422 Cite Download
Hardy I, Lloyd A, Morisset A-S, Camirand Lemyre F, Baillargeon J-P, Fraser WD (2021) Healthy for My Baby Research Protocol- a Randomized Controlled Trial Assessing a Preconception Intervention to Improve the Lifestyle of Overweight Women and Their Partners. Frontiers in Public Health 9. https://doi.org/10.3389/fpubh.2021.670304 Cite Download
Purkayastha S, Xiao Y, Jiao Z, Thepumnoeysuk R, Halsey K, Wu J, Tran TML, Hsieh B, Choi JW, Wang D, Vallieres M (2021) Machine Learning-Based Prediction of COVID-19 Severity and Progression to Critical Illness Using CT Imaging and Clinical Data. Korean Journal of Radiology 22:1213. https://doi.org/10.3348/kjr.2020.1104 Cite
Chatterjee A, Vallieres M, Forghani R, Seuntjens J (2021) Investigating the impact of the CT Hounsfield unit range on radiomic feature stability using dual energy CT data. Physica Medica 88:272–277 Cite
Cong H, Peng W, Tian Z, Vallieres M, Chuanpei X, Aijun Z, Benxin Z (2021) FDG-PET/CT Radiomics Models for The Early Prediction of Locoregional Recurrence in Head and Neck Cancer. Current Medical Imaging 17:374–383. https://doi.org/10.2174/1573405616666200712181135 Cite
DeCunha JM, Poole CM, Vallieres M, Torres J, Camilleri-Broët S, Rayes RF, Spicer JD, Enger SA (2021) Development of patient-specific 3D models from histopathological samples for applications in radiation therapy. Physica Medica 81:162–169 Cite
Morin O, Vallieres M, Braunstein S, Ginart JB, Upadhaya T, Woodruff HC, Zwanenburg A, Chatterjee A, Villanueva-Meyer JE, Valdes G, others (2021) An artificial intelligence framework integrating longitudinal electronic health records with real-world data enables continuous pan-cancer prognostication. Nature Cancer 2:709–722 Cite
Abdoul C, Cros P, Coutier L, Hadchouel A, Neuraz A, Burgun A, Giovannini-Chami L, Drummond D (2020) Parents’ views on artificial intelligence for the daily management of childhood  asthma: a survey. J Allergy Clin Immunol Pract. https://doi.org/10.1016/j.jaip.2020.11.048 Cite
Samadoulougou S, Idzerda L, Dault R, Lebel A, Cloutier A-M, Vanasse A (2020) Validated methods for identifying individuals with obesity in health care administrative databases: A systematic review. Obes Sci Pract 6:677–693. https://doi.org/10.1002/osp4.450 Cite
Czernichow S, Beeker N, Rives-Lange C, Guerot E, Diehl J-L, Katsahian S, Hulot J-S, Poghosyan T, Carette C, Jannot A-S (2020) Obesity Doubles Mortality in Patients Hospitalized for Severe Acute Respiratory  Syndrome Coronavirus 2 in Paris Hospitals, France: A Cohort Study on 5,795 Patients. Obesity (Silver Spring) 28:2282–2289. https://doi.org/10.1002/oby.23014 Cite
Dahl LT, Katz A, McGrail K, Diverty B, Ethier J-F, Gavin F, Mcdonald JT, Paprica PA, Schull M, Walker JD, Wu J (2020) The SPOR-Canadian Data Platform: a national initiative to facilitate data rich multi-jurisdictional research. International journal of population data science 5:1–9. https://doi.org/10.23889/ijpds.v5i1.1374 Cite Download
Lacasse A, Cauvier Charest E, Dault R, Cloutier A-M, Choinière M, Blais L, Vanasse A (2020) Validity of Algorithms for Identification of Individuals Suffering from Chronic Noncancer Pain in Administrative Databases: A Systematic Review. Pain Med 21:1825–1839. https://doi.org/10.1093/pm/pnaa004 Cite
Neuraz A, Lerner I, Digan W, Paris N, Tsopra R, Rogier A, Baudoin D, Cohen KB, Burgun A, Garcelon N, Rance B (2020) Natural Language Processing for Rapid Response to Emergent Diseases: Case Study of  Calcium Channel Blockers and Hypertension in the COVID-19 Pandemic. J Med Internet Res 22:e20773. https://doi.org/10.2196/20773 Cite
Lapointe-Major M, Germain O, Camirand Lemyre J, Lachance-Quirion D, Rochette S, Camirand Lemyre F, Pioro-Ladrière M (2020) Algorithm for automated tuning of a quantum dot into the single-electron regime. Phys Rev B 102:085301. https://doi.org/10.1103/PhysRevB.102.085301 Cite Download
Bibault J-E, Xing L, Giraud P, El Ayachy R, Giraud N, Decazes P, Burgun A, Giraud P (2020) Radiomics: A primer for the radiation oncologist. Cancer Radiother 24:403–410. https://doi.org/10.1016/j.canrad.2020.01.011 Cite
Neuraz A, Rance B, Garcelon N, Llanos LC, Burgun A, Rosset S (2020) The Impact of Specialized Corpora for Word Embeddings in Natural Langage  Understanding. Stud Health Technol Inform 270:432–436. https://doi.org/10.3233/SHTI200197 Cite
Faviez C, Chen X, Garcelon N, Neuraz A, Knebelmann B, Salomon R, Lyonnet S, Saunier S, Burgun A (2020) Diagnosis support systems for rare diseases: a scoping review. Orphanet J Rare Dis 15:94. https://doi.org/10.1186/s13023-020-01374-z Cite
Lacasse A, Pagé MG, Choinière M, Dorais M, Vissandjée B, Nguefack HLN, Katz J, Samb OM, Vanasse A, Vanasse A, Bartlett G, Blais L, Buckeridge D, Choinière M, Hudon C, Lacasse A, Lamarche B, Lebel A, Quesnel-Vallée A, Roberge P, Émond V, Pomey M-P, Benigeri M, Cloutier A-M, Dorais M, Courteau J, Courteau M, Plante S, Cambon P, Giguère A, Leroux I, St-Laurent D, Roy D, Borja J, Néron A, Landry G, Ethier J-F, Dault R, Côté-Marcil M-A, Tremblay P, Quirion S, on behalf of the TorSaDE Cohort Working Group (2020) Conducting gender-based analysis of existing databases when self-reported gender data are unavailable: the GENDER Index in a working population. Canadian Journal of Public Health 111:155–168. Cite
Cumyn A, Barton A, Dault R, Cloutier A-M, Jalbert R, Ethier J-F (2020) Informed consent within a learning health system: A scoping review. Learn Health Syst 4:e10206. Cite Download
Garcelon N, Burgun A, Salomon R, Neuraz A (2020) Electronic health records for the diagnosis of rare diseases. Kidney Int 97:676–686. https://doi.org/10.1016/j.kint.2019.11.037 Cite
Bourbonne V, Fournier G, Vallieres M, Lucia F, Doucet L, Tissot V, Cuvelier G, Hue S, Le Penn Du H, Perdriel L, Bertrand N, Staroz F, Visvikis D, Pradier O, Hatt M, Schick U (2020) External validation of an MRI-derived radiomics model to predict biochemical recurrence after surgery for high-risk prostate cancer. Cancers 12:814. https://doi.org/10.3390/cancers12040814 Cite Download
Zwanenburg A, Vallieres M, Abdalah MA, Aerts HJWL, Andrearczyk V, Apte A, Ashrafinia S, Bakas S, Beukinga RJ, Boellaard R, Bogowicz M, Boldrini L, Buvat I, Cook GJR, Davatzikos C, Depeursinge A, Desseroit M-C, Dinapoli N, Dinh CV, Echegaray S, El Naqa I, Fedorov AY, Gatta R, Gillies RJ, Goh V, Götz M, Guckenberger M, Ha SM, Hatt M, Isensee F, Lambin P, Leger S, Leijenaar RTH, Lenkowicz J, Lippert F, Losnegård A, Maier-Hein KH, Morin O, Müller H, Napel S, Nioche C, Orlhac F, Pati S, Pfaehler EAG, Rahmim A, Rao AUK, Scherer J, Siddique MM, Sijtsema NM, Socarras Fernandez J, Spezi E, Steenbakkers RJHM, Tanadini-Lang S, Thorwarth D, Troost EGC, Upadhaya T, Valentini V, van Dijk LV, van Griethuysen J, van Velden FHP, Whybra P, Richter C, Löck S (2020) The Image Biomarker Standardization Initiative: standardized quantitative radiomics for high-throughput image-based phenotyping. Radiology 191145. https://doi.org/10.1148/radiol.2020191145 Cite Download
Chatterjee A, Vallieres M, Seuntjens J (2020) Overlooked pitfalls in multi-class machine learning classification in radiation oncology and how to avoid them. Physica Medica 70:96–100. https://doi.org/10.1016/j.ejmp.2020.01.009 Cite
Boulet S, Ursino M, Thall P, Landi B, Lepère C, Pernot S, Burgun A, Taieb J, Zaanan A, Zohar S, Jannot A-S (2020) Integration of elicited expert information via a power prior in Bayesian variable  selection: Application to colon cancer data. Stat Methods Med Res 29:541–567. https://doi.org/10.1177/0962280219841082 Cite
Nair JKR, Vallieres M, Mascarella MA, Sabbagh NE, Duchatellier CF, Zeitouni A, Shenouda G, Chankowsky J (2020) Magnetic resonance imaging texture analysis predicts recurrence in patients with nasopharyngeal carcinoma. Canadian Association of Radiologists Journal. https://doi.org/10.1016/j.carj.2019.06.009 Cite Download
Xi IL, Zhao Y, Wang R, Chang M, Purkayastha S, Chang K, Huang RY, Silva AC, Vallieres M, Habibollahi P, Fan Y, Zou B, Gade TP, Zhang PJ, Soulen MC, Zhang Z, Bai HX, Stavropoulos SW (2020) Deep Learning to Distinguish Benign from Malignant Renal Lesions Based on Routine MR Imaging. Clin Cancer Res. https://doi.org/10.1158/1078-0432.CCR-19-0374 Cite Download
Yang DD, Baujat G, Neuraz A, Garcelon N, Messiaen C, Sandrin A, Cheron G, Burgun A, Pejin Z, Cormier-Daire V, Angoulvant F (2020) Healthcare trajectory of children with rare bone disease attending pediatric  emergency departments. Orphanet J Rare Dis 15:2. https://doi.org/10.1186/s13023-019-1284-1 Cite
Depeursinge A, Andrearczyk V, Whybra P, van Griethuysen J, Müller H, Schaer R, Vallieres M, Zwanenburg A (2020) Standardised convolutional filtering for radiomics. arXiv preprint arXiv:200605470 Cite Download
Traverso A, Vallieres M, Van Soest J, Wee L, Morin O, Dekker A (2020) Publishing linked and FAIR radiomics data in radiation oncology via ontologies and Semantic Web. Radiotherapy and Oncology 152:S827–S827 Cite
Avanzo M, Wei L, Stancanello J, Vallieres M, Rao A, Morin O, Mattonen SA, El Naqa I (2020) Machine and deep learning methods for radiomics. Medical physics 47:e185–e202 Cite
Zhao Y, Chang M, Wang R, Xi IL, Chang K, Huang RY, Vallieres M, Habibollahi P, Dagli MS, Palmer M, Zhang PJ, Silva AC, Yang L, Soulen MC, Zhang Z, Bai HX, Stavropoulos SW (2020) Deep Learning Based on MRI for Differentiation of Low- and High-Grade in Low-Stage Renal Cell Carcinoma. Journal of Magnetic Resonance Imaging. https://doi.org/10.1002/jmri.27153 Cite Download
Brat GA, Weber GM, Gehlenborg N, Avillach P, Palmer NP, Chiovato L, Cimino J, Waitman LR, Omenn GS, Malovini A, Moore JH, Beaulieu-Jones BK, Tibollo V, Murphy SN, Yi SL, Keller MS, Bellazzi R, Hanauer DA, Serret-Larmande A, Gutierrez-Sacristan A, Holmes JJ, Bell DS, Mandl KD, Follett RW, Klann JG, Murad DA, Scudeller L, Bucalo M, Kirchoff K, Craig J, Obeid J, Jouhet V, Griffier R, Cossin S, Moal B, Patel LP, Bellasi A, Prokosch HU, Kraska D, Sliz P, Tan ALM, Ngiam KY, Zambelli A, Mowery DL, Schiver E, Devkota B, Bradford RL, Daniar M, Daniel C, Benoit V, Bey R, Paris N, Serre P, Orlova N, Dubiel J, Hilka M, Jannot AS, Breant S, Leblanc J, Griffon N, Burgun A, Bernaux M, Sandrin A, Salamanca E, Cormont S, Ganslandt T, Gradinger T, Champ J, Boeker M, Martel P, Esteve L, Gramfort A, Grisel O, Leprovost D, Moreau T, Varoquaux G, Vie J-J, Wassermann D, Mensch A, Caucheteux C, Haverkamp C, Lemaitre G, Bosari S, Krantz ID, South A, Cai T, Kohane IS (2020) International electronic health record-derived COVID-19 clinical course profiles:  the 4CE consortium. NPJ Digit Med 3:109. https://doi.org/10.1038/s41746-020-00308-0 Cite
Camirand Lemyre F, Desharnais B, Laquerre J, Morel M-A, Côté C, Mireault P, Skinner CD (2020) Qualitative threshold method validation and uncertainty evaluation: a theoretical framework and application to a 40 analytes LC-MS/MS method. Drug Testing and Analysis. https://doi.org/10.1002/dta.2867 Cite Download
Arsenault C, Camirand Lemyre F, Martin P, Lévesque S (2019) Bayesian Evaluation of Solana HSV 1+2/VZV Assay Compared to Viral Culture and Commercial PCR Assay for Cutaneous or Mucocutaneous Specimens. Journal of Clinical Microbiology 58. https://doi.org/10.1128/JCM.01552-19 Cite Download
Chen X, Garcelon N, Neuraz A, Billot K, Lelarge M, Bonald T, Garcia H, Martin Y, Benoit V, Vincent M, Faour H, Douillet M, Lyonnet S, Saunier S, Burgun A (2019) Phenotypic similarity for rare disease: Ciliopathy diagnoses and subtyping. J Biomed Inform 100:103308. https://doi.org/10.1016/j.jbi.2019.103308 Cite
Burgun A (2019) [Basis and perspectives of artificial intelligence in radiation therapy]. Cancer Radiother 23:913–916. https://doi.org/10.1016/j.canrad.2019.08.005 Cite
Looten V, Kong Win Chang L, Neuraz A, Landau-Loriot M-A, Vedie B, Paul J-L, Mauge L, Rivet N, Bonifati A, Chatellier G, Burgun A, Rance B (2019) What can millions of laboratory test results tell us about the temporal aspect of  data quality? Study of data spanning 17 years in a clinical data warehouse. Comput Methods Programs Biomed 181:104825. https://doi.org/10.1016/j.cmpb.2018.12.030 Cite
Bouezmarni T, Camirand Lemyre F, Quessy J-F (2019) On the large-sample behavior of two estimators of the conditional copula under serially dependent data. Metrika 82:823–841. Cite Download
Ibrahim A, Vallieres M, Woodruff H, Primakov S, Beheshti M, Keek S, Refaee T, Sanduleanu S, Walsh S, Morin O, Lambin P, Hustinx R, Mottaghy FM (2019) Radiomics analysis for clinical decision support in nuclear medicine. Seminars in Nuclear Medicine 49:438–449. https://doi.org/10.1053/j.semnuclmed.2019.06.005 Cite Download
Digan W, Wack M, Looten V, Neuraz A, Burgun A, Rance B (2019) Evaluating the Impact of Text Duplications on a Corpus of More than 600,000 Clinical  Narratives in a French Hospital. Stud Health Technol Inform 264:103–107. https://doi.org/10.3233/SHTI190192 Cite
Neuraz A, Looten V, Rance B, Daniel N, Garcelon N, Llanos LC, Burgun A, Rosset S (2019) Do You Need Embeddings Trained on a Massive Specialized Corpus for Your Clinical  Natural Language Processing Task? Stud Health Technol Inform 264:1558–1559. https://doi.org/10.3233/SHTI190533 Cite
Cossette B, Taseen R, Roy-Petit J, Villemure M-P, Grondin M, Ricard G, Goyer F, Blanchard C, Joly-Mischlich T, Ethier J-F (2019) A pharmacist-physician intervention model using a computerized alert system to reduce high-risk medication use in primary care. European Journal of Clinical Pharmacology 75:1017–1023. Cite
Arnoux-Guenegou A, Girardeau Y, Chen X, Deldossi M, Aboukhamis R, Faviez C, Dahamna B, Karapetiantz P, Guillemin-Lanne S, Lillo-Le Louët A, Texier N, Burgun A, Katsahian S (2019) The Adverse Drug Reactions From Patient Reports in Social Media Project: Protocol  for an Evaluation Against a Gold Standard. JMIR Res Protoc 8:e11448. https://doi.org/10.2196/11448 Cite
Morin O, Chen WC, Nassiri F, Susko M, Magill ST, Vasudevan HN, Wu A, Vallieres M, Gennatas ED, Valdes G, Pekmezci M, Alcaide-Leon P, Choudhury A, Interian Y, Mortezavi S, Turgutlu K, Bush NAO, Solberg TD, Braunstein SE, Sneed PK, Perry A, Zadeh G, McDermott MW, Villanueva-Meyer JE, Raleigh DR (2019) Integrated models incorporating radiologic and radiomic features predict meningioma grade, local failure, and overall survival. Neuro Oncol Adv 1. https://doi.org/10.1093/noajnl/vdz011 Cite Download
Wei L, Rosen B, Vallieres M, Chotchutipan T, Mierzwa M, Eisbruch A, El Naqa I (2019) Automatic recognition and analysis of metal streak artifacts in head and neck computed tomography for radiomics modeling. Physics and Imaging in Radiation Oncology 10:49–54. https://doi.org/10.1016/j.phro.2019.05.001 Cite Download
Zhou H, Chang K, Bai HX, Xiao B, Su C, Bi WL, Zhang PJ, Senders JT, Vallieres M, Kavouridis VK, Boaro A, Arnaout O, Yang L, Huang RY (2019) Machine learning reveals multimodal MRI patterns predictive of isocitrate dehydrogenase and 1p/19q status in diffuse low- and high-grade gliomas. J Neurooncol 142:299–307. Cite Download
Lucia F, Visvikis D, Vallieres M, Desseroit M-C, Miranda O, Robin P, Bonaffini PA, Alfieri J, Masson I, Mervoyer A, Reinhold C, Pradier O, Hatt M, Schick U (2019) External validation of a combined PET and MRI radiomics model for prediction of recurrence in cervical cancer patients treated with chemoradiotherapy. Eur J Nucl Med Mol Imaging 46:864–877. Cite Download
Bourbonne V, Vallieres M, Lucia F, Fournier G, Valéri A, Visvikis D, Tissot V, Pradier O, Hatt M, Schick U (2019) PO-0857 MRI-derived radiomics to select patients with high-risk prostate cancer for adjuvant radiotherapy. Radiotherapy and Oncology 133:S451–S452. https://doi.org/10.1016/S0167-8140(19)31277-0 Cite
Durivage A, Le Templier G, Cumyn A, Sauvé N (2019) Pregnancy in a woman with latent myeloproliferative neoplasm induced chronic portal vein thrombosis, portal cavernoma, and gastric varices. Case Rep Obstet Gynecol 2019. https://doi.org/10.1155/2019/5702983 Cite Download
Bussy S, Veil R, Looten V, Burgun A, Gaïffas S, Guilloux A, Ranque B, Jannot A-S (2019) Comparison of methods for early-readmission prediction in a high-dimensional  heterogeneous covariates and time-to-event outcome framework. BMC Med Res Methodol 19:50. https://doi.org/10.1186/s12874-019-0673-4 Cite
Djian J, Lellouch AG, Botter C, Levy J, Burgun A, Hivelin M, Lantieri L (2019) [Clinical photography by smartphone in plastic surgery and protection of personal  data: Development of a secured platform and application on 979 patients]. Ann Chir Plast Esthet 64:33–43. https://doi.org/10.1016/j.anplas.2018.06.005 Cite
Bouezmarni T, Camirand Lemyre F, El Ghouch A (2019) Estimation of a bivariate conditional copula when a variable is subject to random right censoring. Electronic Journal of Statistics 13:5044–5087. Cite Download
Cohen S, Jannot A-S, Iserin L, Bonnet D, Burgun A, Escudié J-B (2019) Accuracy of claim data in the identification and classification of adults with  congenital heart diseases in electronic medical records. Arch Cardiovasc Dis 112:31–43. https://doi.org/10.1016/j.acvd.2018.07.002 Cite
Bourbonne V, Vallieres M, Lucia F, Doucet L, Visvikis D, Tissot V, Cuvelier G, Hue S, Prigent L, Bertrand N, Staroz F, Pradier O, Hatt M, Schick U (2019) Validation of an MRI-Derived Radiomics Model to Guide Patients Selection for Adjuvant Radiotherapy after Prostatectomy for High-Risk Prostate Cancer. International Journal of Radiation Oncology*Biology*Physics 105:E266–E267. https://doi.org/https://doi.org/10.1016/j.ijrobp.2019.06.1879 Cite
Bourbonne V, Vallieres M, Lucia F, Doucet L, Tissot V, Cuvelier G, Hue S, Du HLP, Perdriel L, Bertrand N, Starroz F, Visvikis D, Pradier O, Hatt M, Schick U (2019) Validation externe d'un modèle radiomique dérivé de l'IRM pour guider la sélection des patients en vue d'une radiothérapie adjuvante après prostatectomie dans le cadre d'un adénocarcinome prostatique à haut risque. Cancer/Radiothérapie 23:791–792. https://doi.org/https://doi.org/10.1016/j.canrad.2019.07.011 Cite Download
Lucia F, Visvikis D, Vallieres M, Desseroit M, Miranda O, Robin P, Bonaffini P, Alfieri J, Masson I, Mervoyer A, Pradier O, Hatt M (2019) EP-1476 Validation of a combined PET and MRI radiomics model for prediction of recurrence in cervical cancer. Radiotherapy and Oncology 133:S800 Cite
Bourbonne V, Vallieres M, Lucia F, Doucet L, Visvikis D, Tissot V, Pradier O, Hatt M, Schick U (2019) MRI-derived radiomics to guide post-operative management for high-risk prostate cancer. Front Oncol 9. https://doi.org/10.3389/fonc.2019.00807 Cite Download
Giraud P, Giraud P, Gasnier A, El Ayachy R, Kreps S, Foy J-P, Durdux C, Huguet F, Burgun A, Bibault J-E (2019) Radiomics and Machine Learning for Radiotherapy in Head and Neck Cancers. Front Oncol 9:174. https://doi.org/10.3389/fonc.2019.00174 Cite
Bouezmarni T, Camirand Lemyre F, Quessy J-F (2019) Inference on local causality and tests of non-causality in time series. Electronic Journal of Statistics 13:4121–4156. https://doi.org/10.1214/19-EJS1623 Cite Download
Cumyn A, Card SE, Gibson P (2019) Mapping of essential content of an obstetric medicine curriculum from the perspective of two groups. Canadian Journal of General Internal Medicine 14:13–20 Cite Download
Belzile M, Pouliot A, Cumyn A, Cote AM (2018) Renal physiology and fluid and electrolyte disorders in pregnancy. Best Pract Res Clin Obstet Gynaecol. https://doi.org/10.1016/j.bpobgyn.2018.11.008 Cite
Barma MA, Soiza RL, Donnan PT, McGilchrist MM, Frost H, Witham MD (2018) Serum sodium level variability as a prognosticator in older adults. Scand J Clin Lab Invest 78:632–638. https://doi.org/10.1080/00365513.2018.1543893 Cite Download
Gruson D, Petrelluzzi J, Mehl J, Burgun A, Garcelon N (2018) [Ethical, legal and operational issues of artificial intelligence]. Rev Prat 68:1145–1148 Cite
Bibault J-E, Giraud P, Housset M, Durdux C, Taieb J, Berger A, Coriat R, Chaussade S, Dousset B, Nordlinger B, Burgun A (2018) Author Correction: Deep Learning and Radiomics predict complete response after  neo-adjuvant chemoradiation for locally advanced rectal cancer. Sci Rep 8:16914. https://doi.org/10.1038/s41598-018-35359-7 Cite
Cumyn A, Ouellet K, Côté A-M, Francoeur C, St-Onge C (2018) Role of researchers in the ethical conduct of research: A discourse analysis from different stakeholder perspectives. Ethics & Behavior 0:1–16. Cite
Cumyn A, Gibson P (2018) Validation of content of clinical cases in obstetric medicine for a shared web-based educational tool. Obstet Med 1753495X18804744. Cite
Madar HM, Baillargeon J-P, Brown C, Langlois M-F (2018) Improved follow up and monitoring for diabetes through an integrated community-based program for the prevention and management of chronic diseases. Canadian Journal of Diabetes 42(5): S46 Cite
Karunagaran R, Coghlan C, Tran D, Tung TT, Burgun A, Doonan C, Losic D (2018) A Facile Synthesis Procedure for Sulfonated Aniline Oligomers with Distinct  Microstructures. Materials (Basel) 11. https://doi.org/10.3390/ma11091755 Cite
Bibault J-E, Giraud P, Housset M, Durdux C, Taieb J, Berger A, Coriat R, Chaussade S, Dousset B, Nordlinger B, Burgun A (2018) Deep Learning and Radiomics predict complete response after neo-adjuvant  chemoradiation for locally advanced rectal cancer. Sci Rep 8:12611. https://doi.org/10.1038/s41598-018-30657-6 Cite
Cohen S, Gilutz H, Marelli AJ, Iserin L, Benis A, Bonnet D, Burgun A (2018) Administrative health databases for addressing emerging issues in adults with CHD: a  systematic review. Cardiol Young 28:844–853. https://doi.org/10.1017/S1047951118000446 Cite
Garcelon N, Neuraz A, Salomon R, Bahi-Buisson N, Amiel J, Picard C, Mahlaoui N, Benoit V, Burgun A, Rance B (2018) Next generation phenotyping using narrative reports in a rare disease clinical data  warehouse. Orphanet J Rare Dis 13:85. https://doi.org/10.1186/s13023-018-0830-6 Cite
Verheij RA, Curcin V, Delaney BC, McGilchrist MM (2018) Possible sources of bias in primary care electronic health record data use and reuse. J Med Internet Res 20:e185. Cite
Huxley MT, Burgun A, Ghodrati H, Coghlan CJ, Lemieux A, Champness NR, Huang DM, Doonan CJ, Sumby CJ (2018) Protecting-Group-Free Site-Selective Reactions in a Metal-Organic Framework Reaction  Vessel. J Am Chem Soc 140:6416–6425. https://doi.org/10.1021/jacs.8b02896 Cite
Ethier J-F, McGilchrist MM, Barton A, Cloutier A-M, Curcin V, Delaney BC, Burgun A (2018) The TRANSFoRm project: Experience and lessons learned regarding functional and interoperability requirements to support primary care. Learn Health Syst 2:e10037. https://doi.org/10.1002/lrh2.10037 Cite Download
Deborde T, Amar L, Bobrie G, Postel-Vinay N, Battaglia C, Tache A, Chedid A, Dhib M-M, Chatellier G, Plouin P-F, Burgun A, Azizi M, Jannot A-S (2018) Sex differences in antihypertensive treatment in France among 17 856 patients in a  tertiary hypertension unit. J Hypertens 36:939–946. https://doi.org/10.1097/HJH.0000000000001607 Cite
Garcelon N, Neuraz A, Salomon R, Faour H, Benoit V, Delapalme A, Munnich A, Burgun A, Rance B (2018) A clinician friendly data warehouse oriented toward narrative reports: Dr.  Warehouse. J Biomed Inform 80:52–63. https://doi.org/10.1016/j.jbi.2018.02.019 Cite
Zapletal E, Bibault J-E, Giraud P, Burgun A (2018) Integrating Multimodal Radiation Therapy Data into i2b2. Appl Clin Inform 9:377–390. https://doi.org/10.1055/s-0038-1651497 Cite
Abdellaoui R, Foulquié P, Texier N, Faviez C, Burgun A, Schück S (2018) Detection of Cases of Noncompliance to Drug Treatment in Patient Forum Posts: Topic  Model Approach. J Med Internet Res 20:e85. https://doi.org/10.2196/jmir.9222 Cite
Sun B, Southam HM, Butler JA, Poole RK, Burgun A, Tarzia A, Keene FR, Collins JG (2018) Synthesis, isomerisation and biological properties of mononuclear ruthenium  complexes containing the bis[4(4’-methyl-2,2’-bipyridyl)]-1,7-heptane ligand. Dalton Trans 47:2422–2434. https://doi.org/10.1039/c7dt04595f Cite
Cossette B, Taseen R, Roy-Petit J, Villemure M, Grondin M, Ricard G, Goyer F, Blanchard T, Ethier J-F (2018) Reduction in potentially inappropriate medication use in community-dwelling older adults followed by a Family Health Team. Journal of the American Geriatrics Society 66:S57–S57 Cite
Vanasse A, Courteau M, Ethier J-F (2018) The "6W" multidimensional model of care trajectories for patients with chronic ambulatory care sensitive conditions and hospital readmissions. Public Health 157:53–61. Cite Download
Khnaisser C, Lavoie L, Burgun A, Ethier J-F (2018) Generating relational database using ontology review : Issues, challenges and trends. International Journal of Advanced Computer Science and Applications (IJACSA) 9. Cite Download
Bibault J-E, Zapletal E, Rance B, Giraud P, Burgun A (2018) Labeling for Big Data in radiation oncology: The Radiation Oncology Structures  ontology. PLoS One 13:e0191263. https://doi.org/10.1371/journal.pone.0191263 Cite
Ethier J-F, Barton A, Taseen R (2018) An ontological analysis of drug prescriptions. Applied Ontology 13:273–294. https://doi.org/10.3233/AO-180202 Cite Download
Van Praagh S, Menard J-F, Montreuil M, Noronha C, Talwar V, Carnevale FA (2018) Learning from JJ: An interdisciplinary conversation about child welfare, health care, and law. McGill JL & Health 12:123 Cite
Montreuil M, Menard J-F, Carnevale FA (2018) Where vulnerability can become a strength: A focused ethnography of a community program for youth exposed to violence. Children and Youth Services Review 91:390–397 Cite
Jantzen R, Rance B, Katsahian S, Burgun A, Looten V (2018) The Need of an Open Data Quality Policy: The Case of the “Transparency - Health”  Database in the Prevention of Conflict of Interest. Stud Health Technol Inform 247:611–615 Cite
Karapetiantz P, Bellet F, Audeh B, Lardon J, Leprovost D, Aboukhamis R, Morlane-Hondère F, Grouin C, Burgun A, Katsahian S, Jaulent M-C, Beyens M-N, Lillo-Le Louët A, Bousquet C (2018) Descriptions of Adverse Drug Reactions Are Less Informative in Forums Than in the  French Pharmacovigilance Database but Provide More Unexpected Reactions. Front Pharmacol 9:439. https://doi.org/10.3389/fphar.2018.00439 Cite
Chen X, Faviez C, Schuck S, Lillo-Le-Louët A, Texier N, Dahamna B, Huot C, Foulquié P, Pereira S, Leroux V, Karapetiantz P, Guenegou-Arnoux A, Katsahian S, Bousquet C, Burgun A (2018) Mining Patients’ Narratives in Social Media for Pharmacovigilance: Adverse Effects  and Misuse of Methylphenidate. Front Pharmacol 9:541. https://doi.org/10.3389/fphar.2018.00541 Cite
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Chapitres de livres

Nano T, Lafrenière M, Ziemer B, Witztum A, Barrios J, Upadhaya T, Vallieres M, Interian Y, Valdes G, Morin O (2020) Artificial Intelligence in Radiation Oncology. In: The Modern Technology of Radiation Oncology. Jacob Van Dyk, p 522 Cite
Barton A (2020) L'ontologie appliquée : un dialogue entre métaphysique analytique et traitement de l'information. In: Lacroix A (ed) La philosophie pratique : un passage obligé pour penser la société. Presses de l'Université Laval, pp 87–108 Cite
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Actes de colloques

Toyoshima F, Barton A, Jansen L, Ethier J-F (2021) How an Aggregate View of Social Roles Meets Dispositions. In: Proceedings of the 7th Joint Ontology Workshops (JOWO 2021). CEUR Workshop Proceedings, Bozen-Bolzano, Italy Cite Download
Toyoshima F, Niki S (2021) Semantics Matters: A New Light on Ontological Commitments of Logics. In: Proceedings of the 7th Joint Ontology Workshops (JOWO 2021). CEUR Workshop Proceedings, Bozen-Bolzano, Italy, p 16 Cite Download
Barton A, Vieu L, Ethier J-F (2021) Expressions, Utterances and Directive Slots. In: Proceedings of the Joint Ontology Workshops 2021 (JOWO 2021). CEUR Workshop Proceedings, Bozen-Bolzano, Italy Cite Download
Barton A (2021) Foundations for an Ontology of Nudges. In: Proceedings of the 12th International Conference on Biomedical Ontology (ICBO 2021). CEUR Workshop Proceedings, Bozen-Bolzano, Italy, pp 174–183 Cite
Ecarot T, Fraikin B, Lavoie L, McGilchrist MM, Ethier J-F (2021) Learning health systems: An anonymous network routing protocol. In: Almeida JR, Gonzalez AR, Shen L, Kane B, Soda P, Oliveira JL (eds) Proceedings of the IEEE Symposium on Computer-Based Medical Systems. pp 562–567 Cite
Madar H, Brown C, Baillargeon J-P, Langlois M-F (2021) Programme Agir Sur Sa Santé : Effets sur la qualité des soins des patients à risque ou atteints de maladies chroniques cardiométaboliques dans les soins de première ligne en Estrie. Congrès annuel du Réseau de recherche en santé cardiométabolique, diabète et obésité/ Société québécoise de lipidologie, de nutrition et de métabolisme Cite
Tarbouriech C, Barton A, Vieu L, Ethier J-F (2021) The Counting Problem of Slot Mereology. In: Proceedings of the Joint Ontology Workshops 2021 (JOWO 2021) Cite
Fabry P, Goyer F, Barton A, Ethier J-F (2021) An Ontological Analysis of Health Procedure Information. In: Proceedings of the 12th International Conference on Biological Ontology (ICBO 2021). CEUR Workshop Proceedings, Bozen-Bolzano, Italy, pp 36–47 Cite
Toyoshima F, Barton A, Jansen L, Ethier J-F (2021) Towards a Unified Dispositional Framework for Realizable Entities. In: Proceedings of the 12th International Conference on Formal Ontology in Information Systems (FOIS 2021). IOS Press, Bozen-Bolzano, Italy, pp 64–78 Cite Download
Andrearczyk V, Oreiller V, Boughdad S, Rest CCL, Elhalawani H, Jreige M, Prior JO, Vallieres M, Visvikis D, Hatt M, others (2021) Overview of the HECKTOR challenge at MICCAI 2021: automatic head and neck tumor segmentation and outcome prediction in PET/CT images. In: 3D Head and Neck Tumor Segmentation in PET/CT Challenge. Springer, Cham, pp 1–37 Cite
Andrearczyk V, Oreiller V, Jreige M, Vallieres M, Castelli J, Elhalawani H, Boughdad S, Prior JO, Depeursinge A (2021) Overview of the HECKTOR challenge at MICCAI 2020: automatic head and neck tumor segmentation in PET/CT. In: 3D Head and Neck Tumor Segmentation in PET/CT Challenge. Springer, Cham, pp 1–21 Cite
Ecarot T, Dussault S, Souid A, Lavoie L, Ethier J-F (2020) AppArmor For Health Data Access Control: Assessing Risks and Benefits. In: 2020 7th International Conference on Internet of Things: Systems, Management and Security (IOTSMS). Paris, France, pp 1–7 Cite Download Download
Toyoshima F, Barton A, Ethier J-F (2020) Functional Parthood: A Dispositional Perspective. In: Proceedings of the 6th Joint Ontology Workshops (JOWO 2020). CEUR Workshop Proceedings, Virtual & Bozen-Bolzano, Italy, p 8 Cite Download
Barton A, Toyoshima F, Vieu L, Fabry P, Ethier J-F (2020) The Mereological Structure of Informational Entities. In: Brodaric B, Neuhaus F (eds) Frontiers in Artificial Intelligence and Applications. IOS Press Cite Download
Toyoshima F (2020) Foundations for Ontology of Persistence: Beyond Talk of Temporal Parts. In: Brodaric B, Neuhaus F (eds) Frontiers in Artificial Intelligence and Applications. IOS Press, pp 17–31 Cite
Toyoshima F, Barton A, Grenier O (2020) Foundations for an Ontology of Belief, Desire and Intention. In: Brodaric B, Neuhaus F (eds) Frontiers in Artificial Intelligence and Applications. IOS Press, pp 140–154 Cite
Fabry P, Barton A, Ethier J-F (2020) An Ontological Representation of Sex and Gender Information. In: Hastings J, Loebe F (eds) ICBO|ODLS 2020 International Conference on Biomedical Ontologies 2020. CEUR-WS.org, Bolzano, Italy, p O.1-5 Cite Download
Fabry P, Barton A, Ethier J-F (2020) QUESTO – An ontology for questionnaires. In: ICBO|ODLS 2020 International Conference on Biomedical Ontologies 2020. CEUR-WS.org, Bolzano, Italy, p B.1-12 Cite Download
Barton A, Toyoshima F, Ethier J-F (2020) Clinical Documents and Their Parts. In: Hastings J, Loebe F (eds) ICBO|ODLS 2020 International Conference on Biomedical Ontologies 2020. CEUR-WS.org, Bolzano (virtual event), Italy, p A.1-11 Cite Download
Ecarot T, Fraikin B, Ouellet F, Lavoie L, McGilchrist MM, Ethier J-F (2020) Sensitive Data Exchange Protocol Suite for Healthcare. In: IEEE Symposium on Computers and Communications. Rennes, France Cite Download
Barton A, Toyoshima F, Ethier J-F (2020) Approaching Roles with Affordances. In: Proceedings of the Joint Ontology Workshops. CEUR Workshop Proceedings, Virtual & Bozen-Bolzano, Italy, pp 1–14 Cite Download
Andrearczyk V, Oreiller V, Valllieres M, Castelli J, Elhalawani H, Jreige M, Boughdad S, Prior JO, Depeursinge A (2020) Automatic segmentation of head and neck tumors and nodal metastases in PET-CT scans. In: Medical imaging with deep learning. PMLR, pp 33–43 Cite
Chatterjee A, Vallieres M, Seuntjens J, Forghani R (2020) Advantages of Spectral Energy CT Data for Deep Learning Applications. In: MEDICAL PHYSICS. WILEY 111 RIVER ST, HOBOKEN 07030-5774, NJ USA, pp E575–E575 Cite
Toyoshima F, Barton A (2019) Linking image schemas with affordances: An ontological approach. In: Barton A, Seppälä S, Porello D (eds) Proceedings of the 5th Joint Ontology Workshops (JOWO 2019). CEUR Workshop Proceedings, Graz, Austria, pp 1–9 Cite
Barton A, Seppälä S, Porello D (2019) Proceedings of the Joint Ontology Workshops 2019 - Episode V: The Styrian Autumn of Ontology. In: JOWO 2019 The Joint Ontology Workshops. CEUR Workshop Proceedings, Graz, Autriche Cite
Da Silva Ferreira M, LOVINFOSSE P, DE CUYPERE M, Rovira R, Lucia F, Schick U, Vallieres M, Bonaffini P, Reinhold C, Visvikis D, others (2019) Radiomics for Disease Free Survival prediction using pre-treatment FDG PET images. In: " Imaging of diagnostic and therapeutic biomarkers in Oncology “workshop Manoir de Kerdréan, Le Bono, France, September 25th-28th, 2019. Le Bono, France Cite
Barton A, Vieu L, Ethier J-F (2019) Directing actions. In: Proceedings of the Joint Ontology Workshops 2019 (JOWO 2019). Graz, Autriche, pp 1–10 Cite
Barton A, Fabry P, Lavoie L, Ethier J-F (2019) LABO: An ontology for laboratory test prescription and reporting. In: Proceedings of the Joint Ontology Workshops 2019 (JOWO 2019). Graz, Autriche, pp 1–9 Cite
Corrigan D, Curcin V, Ethier J-F, Flynn A, Sottara D (2019) Challenges of deploying Computable Biomedical Knowledge in real-world applications. Washington, États-Unis Cite
Barton A, Fabry P, Ethier J-F (2019) A classification of instructions in drug prescriptions and pharmacist documents. In: Proceedings of the 10th International Conference on Biomedical Ontology (ICBO 2019). CEUR Workshop Proceedings, Buffalo, New York, USA, pp 1–7 Cite
Masolo C, Barton A (2019) The identity of property particulars. In: Proceedings of the Joint Ontology Workshops 2019 (JOWO 2019). Graz, Autriche, pp 1–10 Cite
Chatterjee A, Vallieres M, Dohan A, Levesque I, Ueno Y, Saif S, Reinhold C, Seuntjens J (2019) Using Dataset-Specific Feature Standardization to Improve Predictive Performance of Radiomic Models. In: MEDICAL PHYSICS. WILEY 111 RIVER ST, HOBOKEN 07030-5774, NJ USA, pp E174–E174 Cite
Traverso A, Vallieres M, van Soest J, Wee L, Morin O, Dekker A (2019) Publishing Linked and FAIR-compliant Radiomics Data in Radiation Oncology via Ontologies and Semantic Web Techniques. In: SWAT4HCLS. pp 143–144 Cite
Diamant A, Chatterjee A, Vallieres M, Shenouda G, Seuntjens J (2019) Multi-Modal Deep Learning Framework for Head & Neck Cancer Outcome Prediction. In: MEDICAL PHYSICS. WILEY 111 RIVER ST, HOBOKEN 07030-5774, NJ USA, pp 5372–5372 Cite
Chatterjee A, Vallieres M, Romero-Sanchez G, Perez-Lara A, Forghani R, Seuntjens J (2019) Multi-Energy Study of Impact of CT Hounsfield Unit Range in Gray Level Discretization On Radiomic Feature Stability. In: MEDICAL PHYSICS. WILEY 111 RIVER ST, HOBOKEN 07030-5774, NJ USA, pp E233–E233 Cite
Diamant A, Chatterjee A, Vallieres M, Shenouda G, Seuntjens J (2019) Multi-Branch Convolutional Neural Network Combines Unregistered PET and CT Images for Head & Neck Cancer Outcome Prediction. In: MEDICAL PHYSICS. WILEY 111 RIVER ST, HOBOKEN 07030-5774, NJ USA, pp E294–E294 Cite
Bourbonne V, Vallieres M, Lucia F, Doucet L, Visvikis D, Tissot V, Pradier O, Hatt M, Schick U (2019) MRI-based Radiomics adjusts adjuvant Treatment after Prostatectomy in Patients with High Risk-Prostate Cancer. In: STRAHLENTHERAPIE UND ONKOLOGIE. SPRINGER HEIDELBERG TIERGARTENSTRASSE 17, D-69121 HEIDELBERG, GERMANY, pp S32–S33 Cite
Chatterjee A, Vallieres M, Dohan A, Levesque IR, Ueno Y, Saif S, Reinhold C, Seuntjens J (2019) Improved external validation performance of predictive radiomics models using statistical methods. In: Radiotherapy and Oncology. ELSEVIER IRELAND LTD ELSEVIER HOUSE, BROOKVALE PLAZA, EAST PARK SHANNON, CO …, pp S513–S513 Cite
Da-ano R, Lucia F, Vallieres M, Bonaffini P, Masson I, Mervoyer A, Reinhold C, Schick U, Visvikis D, Hatt M (2019) Harmonization strategies based on ComBat for mutlicentric radiomics studies. In: EUROPEAN JOURNAL OF NUCLEAR MEDICINE AND MOLECULAR IMAGING. SPRINGER 233 SPRING ST, NEW YORK, NY 10013 USA, pp S254–S254 Cite
Da Silva Ferreira M, LOVINFOSSE P, DE CUYPERE M, Rovira RR, Lucia F, Schick U, Vallieres M, Bonaffini P, Reinhold C, Visvikis D, others (2019) FDG PET radiomics to predict disease-free survival in Cervical Cancer. In: 2019 IEEE Nuclear Science Symposium & Medical Imaging Conference Cite
Toyoshima F, Barton A (2019) A formal representation of affordances as reciprocal dispositions. In: Kutz O, Hedblom MM (eds) Proceedings of TriCoLore 2018: The 7th International Workshop on Computational Creativity, Concept Invention, and General Intelligence (C3GI 2018), The 4th Image Schema Day (ISD4), and SCORE. CEUR Workshop Proceedings, Bolzano, Italie, pp 1–9 Cite
Barton A, Grenier O, Ethier J-F (2018) The identity and mereology of pathological dispositions. In: Jaiswal P, Cooper L, Haendel MA, Mungall CJ (eds) Proceedings of the 9th International Conference on Biological Ontology (ICBO 2018). CEUR Workshop Proceedings, Corvallis, Oregon, États-Unis, pp 1–6 Cite
Barton A, Jansen L, Rosier A, Ethier J-F (2018) What is a risk? A formal representation of risk of stroke for people with atrial fibrillation. In: Proceedings of the 8th International Conference on Biomedical Ontology. Newcastle, UK, pp 1–6 Cite Download
Barton A, Duncan W, Toyoshima F, Ethier J-F (2018) First steps towards an ontology of belief. In: Proceedings of the Joint Ontology Workshops 2018 (JOWO 2018). Cape Town, Afrique du Sud, pp 1–5 Cite Download
Barton A, Grenier O, Jansen L, Ethier J-F (2018) The identity of dispositions. In: Borgo S, Hitzler P, Kutz O (eds) Formal Ontology in Information Systems. Proceedings of the 10th International Conference (FOIS 2018). IOS Press, Cape Town, Afrique du Sud, pp 113–126 Cite Download Download
Barton A, Jansen L, Ethier J-F (2018) A taxonomy of disposition-parthood. In: Galton A, Neuhaus F (eds) Proceedings of the Joint Ontology Workshops 2017, CEUR Workshop proceedings. CEUR Workshop Proceedings, Bolzano, Italie, pp 1–10 Cite Download
Madar HM, Brown C, Baillargeon J-P, Langlois M-F (2018) Improved obesity screening and management using integrated community-based chronic diseases program. Nashville, Tennessee, USA Cite
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Présentations

Vanasse A, Boivin A, Dumez V, Ethier J-F, Leblanc A, Légaré F, Pluye P, Belec G, Pelletier J-G (2019) A learning health system oriented toward care trajectories Cite Download
Vanasse A, Ethier J-F, Dault R, Benigeri M, Cloutier A-M (2019) Validated case selection algorithms to identify 7 ambulatory care sensitive conditions Cite Download
Ethier J-F (2019) ReflexD. Évaluer et améliorer la qualité des soins. Soutenir  le suivi de personnes diabétiques en première ligne Cite
Ethier J-F (2019) PARS3, an infrastructure to support data access activities in context of learning health systems Cite
Ethier J-F (2019) Plateforme apprenante pour la recherche en santé et services sociaux (PARS3). Ontologie, Données et Informatique médicale Cite
Ethier J-F (2019) Partage des données de santé au Québec : Permettons de changer le devenir des patients avec PARS3 Cite
Ethier J-F (2019) Partage des données de santé au Québec : les systèmes de santé apprenants au service des citoyens Cite
Ethier J-F (2019) Implementation of a province-wide ecosystem to maximise health data value for all: challenges and solutions Cite
Ethier J-F (2019) Learning health systems: challenges and opportunities Cite
Fabry P, Barton A, Ethier J-F (2019) LABO: an ontology for laboratory test prescription and reporting Cite Download Download
Vallieres M (2019) Radiomics: the Image Biomarker Standardisation Initiative (IBSI) Cite
Vallieres M (2019) Radiomics: the Image Biomarker Standardisation Initiative (IBSI) Cite
Vallieres M (2019) MEDomicsLab: an open-source computation platform for integrative data modeling in medicine Cite
Vallieres M (2019) MEDomics: synergie entre analyse d’images médicales, apprentissage automatique, apprentissage profond, traitement automatique des langues naturelles et apprentissage distribué Cite
Vallieres M (2019) Radiomics: the Image Biomarker Standardisation Initiative (IBSI) Cite
Vanasse A, Benigeri M, Courteau J, Dorais M, Ethier J-F (2018) Linking canadian community health surveys to administrative data in Quebec: A unique opportunity for health care trajectories research on ambulatory care sensitive conditions Cite
Ecarot T (2018) Assurer la sécurité des données de bout en bout durant le cycle de vie d’une application Cite
Beaudoin A-A, Dault R, Barton A, Cumyn A, Cloutier A-M, Ethier J-F (2018) Initiative CLARET: consentement pour l’utilisation secondaire des données médicales en recherche Cite
Ethier J-F (2018) Plateforme apprenante pour la recherche en santé et services sociaux — PARS3 — Learning health and social services research platform Cite
Ethier J-F (2018) Quelles ontologies pour un système de santé apprenant ?​ Cite Download
Dault R, Barton A, Cumyn A, Cloutier A-M, Ethier J-F (2018) Caractériser le processus de consentement à la recherche dans un système de santé apprenant Cite Download
Cloutier A-M, Dussault S, Lavoie L, Vanasse A, Ethier J-F (2018) Soutenir l’exploitation sécuritaire et transparente des dossiers médicaux électroniques au Québec avec PARS3 Cite Download Download
Dault R, Barton A, Cumyn A, Cloutier A-M, Ethier J-F (2018) Caractériser le processus de consentement à la recherche dans un système de santé apprenant Cite Download
Ethier J-F (2018) Accès aux données et système de santé apprenant: atteindre le plein potentiel Cite Download
Ethier J-F (2018) Learning health systems supporting primary care: Lessons learned and opportunities Cite Download
Ethier J-F (2018) Plateforme apprenante pour la recherche en santé et services sociaux — PARS3 Cite
Ethier J-F (2018) Plateforme apprenante pour la recherche en santé et services sociaux — PARS3 — Learning health and social services research platform Cite
Ethier J-F (2018) Plateforme apprenante pour la recherche en santé et services sociaux — PARS3 Cite
Ethier J-F (2018) Plateforme apprenante pour la recherche en santé et services sociaux — PARS3 Cite
Ethier J-F (2018) Plateforme apprenante pour la recherche en santé et services sociaux (PARS3) Cite
Ethier J-F, Ibara M (2018) Use of Electronic Health Records (EHRs) as eSource in Clinical Investigations Cite
Ethier J-F (2018) Données de recherche en contexte d’utilisation secondaire des données en santé Cite
Ethier J-F (2018) Utilisation des données cliniques issues des dossiers médicaux électroniques à des fins de recherche et d’amélioration continue de la qualité des soins et services de première ligne Cite
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Rapports

Zwanenburg A, Leger S, Vallieres M, Löck S (2020) Image biomarker standardisation initiative Cite Download
Paprica PA, Maillet DC, Dahl L, Diverty B, Ethier J-F, Gavin F, Katz A, Lix LM, MacDonald D, McDonald T, McGrail K, Quan H, Rowe R, Schull MJ, Street C, Victor JC, Walker J, Wu J, Yada N (2020) Infrastructure de recherche numérique sur la santé des populations : s'appuyer sur un réseau d'apprentissage collaboratif. Réseau de recherche sur les données de santé du Canada (RRDS Canada) Cite
Khnaisser C, Lavoie L, Fraikin B, Barton A, Burgun A, Ethier J-F (2019) Generating a relational database for heterogeneous data using an ontology Cite Download
Beaulieu M-D, Cloutier A-M, Dault R, Ethier J-F, Goetghebeur M, Khanji C, Roy D, Vanasse A (2018) Utilisation des données cliniques issues des dossiers médicaux électroniques à des fins de recherche et d'amélioration continue de la qualité des soins et services de première ligne. Unité Soutien SRAP du Québec et INESSS Cite Download
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Thèses et mémoires

Madar H (2020) Effets du programme " Agir Sur Sa Santé " sur la qualité des soins des patients à risque ou atteints de maladies chroniques cardiométaboliques dans les Centres de santé et de services sociaux de l'Estrie. Sherbrooke Cite
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Groupe de recherche interdisciplinaire en informatique de la santé
Université de Sherbrooke
2500, boul. de l'Université, Sherbrooke (Québec) J1K 2R1 Canada

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