Publications

Articles de périodiques scientifiques

Tarbouriech C, Vieu L, Barton A, Ethier J-F (2024) From slot mereology to a mereology of slots. Applied Ontology Preprint:1–50. https://doi.org/10.3233/AO-230051 Cite
Dubé T, Cumyn A, Fourati M, Chamberland M, Hatcher S, Landry M (2023) Pathways, journeys and experiences: Integrating curricular activities related to social accountability within an undergraduate medical curriculum. Medical Education 1–10. https://doi.org/10.1111/medu.15260 Cite
Bilodeau E, Cumyn A, Ménard J-F, Dault R, Barton A, Ethier J-F (2023) Utilisations secondaires des données de santé : impacts de la transparence [soumis]. Revue Canadienne de Bioéthique Cite
Cumyn A, Ménard J-F, Barton A, Dault R, Lévesque F, Ethier J-F (2023) Patients' and Members of the Public's Wishes Regarding Transparency in the Context of Secondary Use of Health Data: Scoping Review. J Med Internet Res 25:e45002. https://doi.org/10.2196/45002 Cite
Khnaisser C, Looten V, Ethier J-F, Lavoie L, Burgun A (2023) Combining ontology and temporal databases for data reuse: the example of hospital organizational structures. International Journal of Medical Informatics *** accepted with minor changes Cite
Cumyn A, Larouche C, Dubé T, Millette C-A, Gagné E-R (2023) Portrait de l’évolution de la responsabilité sociale d’une faculté de médecine canadienne basé sur le modèle de Boelen. [soumis]. CMEJ Cite
Khnaisser C, Lavoie L, Fraikin B, Barton A, Dussault S, Burgun A, Ethier J-F (2022) Using an ontology to derive a sharable and interoperable relational data model for heterogeneous healthcare data and various applications. Methods Inf Med 61:e73–e88. https://doi.org/10.1055/a-1877-9498 Cite Download
Roberge P, Houle J, Provost J-R, Coulombe S, Beaudin A, Bower P, Camirand Lemyre F, Drapeau M, Drouin M-S, Hudon C, Provencher MD, Vasiliadis H-M (2022) A pragmatic randomized controlled trial of a group self-management support program versus treatment-as-usual for anxiety disorders: study protocol. BMC Psychiatry 22:135. Cite Download
McKay R, Letarte L, Lebel A, Quesnel-Vallée A, Vanasse A, Bartlett G, Blais L, Buckeridge D, Choinière M, Hudon C, Lacasse A, Lamarche B, Lebel A, Quesnel-Vallée A, Roberge P, Émond V, Pomey M-P, Benigeri M, Cloutier A-M, Dorais M, Courteau J, Courteau M, Plante S, Cambon P, Giguère A, Leroux I, St-Laurent D, Roy D, Borja J, Néron A, Landry G, Ethier J-F, Dault R, Côté-Marcil M-A, Tremblay P, Quirion S, on behalf of the TorSaDE Cohort Working Group (2022) Exploring social inequalities in healthcare trajectories following diagnosis of diabetes: a state sequence analysis of linked survey and administrative data. BMC Health Services Research 22:131. Cite
Toyoshima F, Barton A, Ethier J-F (2022) Affordances and their ontological core. Applied Ontology 17:285–320. Cite
Yousif A, Dault R, Courteau M, Blais L, Cloutier A-M, Lacasse A, Vanasse A, Bartlett G, Benigeri M, Blais L, Borja J, Buckeridge D, Choinière M, Côté-Marcil M-A, Courteau J, Courteau M, Dorais M, Dubé F, Ethier J-F, Émond V, Giguère A, Hudon C, Jean S, Lacasse A, Lamarche B, Lebel A, Leroux I, Néron A, Plante S, Pomey M-P, Quesnel-Vallée A, Quirion S, Rheaume J, Roberge P, Roy D, Tremblay P, on behalf of the TorSaDE Cohort Working Group (2022) The validity of diagnostic algorithms to identify asthma patients in healthcare administrative databases: a systematic literature review. J Asthma 59:152–168. https://doi.org/10.1080/02770903.2020.1827425 Cite
Paré-Beauchemin R, Madar H, Dorion A-S, Angrand R, Chapdelaine A, Saucier D, Hernández-Hernández A, Mendoza J, Idrissi Z (2022) La nécessité de débuter les apprentissages en mobilisation de connaissances dès le début des études universitaires : points de vue d’étudiants et d’étudiantes gradués. 6:1–8. https://doi.org/10.18166/tuc.2022.6.1.24 Cite
Dufour I, Vedel I, Quesnel-Vallée A, Vanasse A, Lebel A, Lacasse A, Néron A, Cloutier A-M, Giguère A, Lamarche B, Vissandjée B, Hudon C, St-Laurent D, Buckeridge D, Roy D, Landry G, Bartlett G, Blanchet G, Nguena Nguefack HL, Leroux I, Borja J, Ethier J-F, Courteau J, Blais L, Choinière M, Dorais M, Blanchette M-A, Côté-Marcil M-A, Fleury M-J, Pomey M-P, Benigeri M, Courteau M, Sourial N, Roberge P, Tremblay P, Cambon P, Dault R, Jean S, Quirion S, Plante S, Poder T, Émond V, on behalf of the TorSaDE Cohort Working Group (2022) Identification of Major Cognitive Disorders in Self-Reported versus Administrative Health Data: A Cohort Study in Quebec. Journal of Alzheimer’s Disease Preprint:1–11. https://doi.org/10.3233/JAD-220327 Cite
Letarte L, Samadoulougou S, McKay R, Quesnel-Vallée A, Waygood EOD, Lebel A, Vanasse A, Bartlett G, Blais L, Buckeridge D, Choinière M, Hudon C, Lacasse A, Lamarche B, Roberge P, Émond V, Pomey M-P, Benigeri M, Cloutier A-M, Dorais M, Courteau J, Courteau M, Plante S, Cambon P, Giguère A, Leroux I, St-Laurent D, Roy D, Borja J, Néron A, Landry G, Ethier J-F, Dault R, Côté-Marcil M-A, Tremblay P, Quirion S, TorSaDE Cohort Working Group (2022) Neighborhood deprivation and obesity: Sex-specific effects of cross-sectional, cumulative and residential trajectory indicators. Social Science & Medicine 306:115049. https://doi.org/https://doi.org/10.1016/j.socscimed.2022.115049 Cite
Madar H, Ghandour E-K, Perez J, Gauvin L, Ethier J-F, Pomey M-P (2022) Adherence to diabetes clinical practice guidelines to improve prevention and treatment of cardiovascular disease in Quebec: A retrospective cohort 2017-2020. Diabetes Epidemiology and Management 6:100053. https://doi.org/https://doi.org/10.1016/j.deman.2022.100053 Cite Download
Keek SA, Beuque M, Primakov S, Woodruff HC, Chatterjee A, van Timmeren JE, Vallieres M, Hendriks LEL, Kraft J, Andratschke N, Braunstein SE, Morin O, Lambin P (2022) Predicting Adverse Radiation Effects in Brain Tumors After Stereotactic Radiotherapy With Deep Learning and Handcrafted Radiomics. Frontiers in Oncology 12. https://doi.org/10.3389/fonc.2022.920393 Cite Download
Aube E, Lewin A, O'Brien SF, Grégoire Y, Pillonel J, Steele WR, Custer B, Davison KL, Germain M, Seed CR, Camirand Lemyre F, the Surveillance, Risk Assessment and Policy Subgroup of the ISBT Transfusion Transmitted Infectious Diseases Working Party (2022) HIV residual risk in Canada for apheresis source plasma donation without deferral for men who have sex with men. Vox Sanguinis 117:201–207. https://doi.org/https://doi.org/10.1111/vox.13176 Cite Download
Gagnon G, Carreau A-M, Cloutier-Langevin C, Plante A-S, Weisnagel SJ, Marceau S, Biertho L, Hould FS, Camirand Lemyre F, Tchernof A, Morisset A-S (2022) Trimester-specific gestational weight gain in women with and without previous bariatric surgeries. European Journal of Obstetrics & Gynecology and Reproductive Biology 270:252–258. https://doi.org/https://doi.org/10.1016/j.ejogrb.2021.12.033 Cite Download
Camirand Lemyre F, Carroll RJ, Delaigle A (2022) Semiparametric Estimation of the Distribution of Episodically Consumed Foods Measured With Error. Journal of the American Statistical Association 117:469–481. Cite Download
Domingue M-P, Camirand Lemyre F, Aubé E, Renaud C, Thibeault C, Caruso J, Otis J, Grégoire Y, Lewin A (2022) Risk of transfusion-related acute lung injury and human immunodeficiency virus associated with donations from trans donors in Quebec, Canada. Vox Sanguinis n/a. https://doi.org/https://doi.org/10.1111/vox.13299 Cite Download
George E, Flagg E, Chang K, Bai H, Aerts H, Vallieres M, Reardon D, Huang R (2022) Radiomics-Based Machine Learning for Outcome Prediction in a Multicenter Phase II Study of Programmed Death-Ligand 1 Inhibition Immunotherapy for Glioblastoma. American Journal of Neuroradiology 43:675–681. https://doi.org/10.3174/ajnr.A7488 Cite
Le Rest CC, Elhalawani H, Jreige M, Prior JO, Vallieres M, Visvikis D, Hatt M, Depeursinge A (2022) Overview of the HECKTOR Challenge at MICCAI 2021: Automatic Head and Neck Tumor Segmentation and Outcome Prediction in PET/CT Images. Head and Neck Tumor Segmentation and Outcome Prediction: Second Challenge, HECKTOR 2021, Held in Conjunction with MICCAI 2021, Strasbourg, France, September 27, 2021, Proceedings 13209:1 Cite
Oreiller V, Andrearczyk V, Jreige M, Boughdad S, Elhalawani H, Castelli J, Vallieres M, Zhu S, Xie J, Peng Y, others (2022) Head and neck tumor segmentation in PET/CT: the HECKTOR challenge. Medical Image Analysis 77:102336 Cite
Fontaine P, Andrearczyk V, Oreiller V, Abler D, Castelli J, Acosta O, De Crevoisier R, Vallieres M, Jreige M, Prior JO, others (2022) Cleaning radiotherapy contours for radiomics studies, is it worth it? A head and neck cancer study. Clinical and Translational Radiation Oncology 33:153–158 Cite
DeCunha JM, Villegas F, Vallieres M, Torres J, Camilleri-Broët S, Enger SA (2021) Patient-specific microdosimetry: a proof of concept. Physics in Medicine & Biology 66:185011. Cite
Cumyn A, Dault R, Barton A, Cloutier A-M, Ethier J-F (2021) Citizens, Research Ethics Committee Members and Researchers' Attitude Toward Information and Consent for the Secondary Use of Health Data: Implications for Research Within Learning Health Systems. J Empir Res Hum Res Ethics 16:165–178. https://doi.org/10.1177/1556264621992214 Cite Download
Cumyn A, Barton A, Dault R, Safa N, Cloutier A-M, Ethier J-F (2021) Meta-consent for the secondary use of health data within a learning health system: a qualitative study of the public's perspective. BMC Med Ethics 22:81. Cite Download
Lachance O, Goyer F, Adhikari NKJ, Masse M-H, Bilodeau J-F, Lamontagne F, Leclair M-A (2021) High-dose vitamin-C induced prolonged factitious hyperglycemia in a peritoneal dialysis patient: a case report. Journal of Medical Case Reports 15:297. Cite
Olivier Grenier, Adrien Barton (2021) Vers une ontologie dispositionnelle du risque. Lato Sensu 8:57–69. https://doi.org/10.20416/LSRSPS.V8I2.6 Cite Download
Lebrun A, Cloutier-Langevin C, Plante A-S, Savard C, Weisnagel SJ, Robitaille J, Camirand Lemyre F, Morisset A-S (2021) Trimester-Specific and Total Gestational Weight Gain in Two Consecutive Pregnancies. Journal of Obstetrics and Gynaecology Canada (JOGC) 43:483–489 Cite Download
Barton A, Cumyn A, Dault R, Ethier J-F (2021) Gift, Reciprocity and Learning Health Systems. Am J Bioeth 21:91–93. Cite
Loignon-Houle F, Gundacker S, Toussaint M, Camirand Lemyre F, Auffray E, Fontaine R, Charlebois SA, Lecoq P, Lecomte R (2021) DOI estimation through signal arrival time distribution: a theoretical description including proof of concept measurements. Physics in Medicine &$\mathsemicolon$ Biology 66:095015. Cite Download
Camirand Lemyre F, Chalifoux K, Desharnais B, Mireault P (2021) Squaring Things Up with R2: What It Is and What It Can (and Cannot) Tell You. Journal of Analytical Toxicology 46:443–448. Cite Download
Ecarot T, Fraikin B, Lavoie L, McGilchrist M, Ethier J-F (2021) A Sensitive Data Access Model in Support of Learning Health Systems. Computers 10:25. https://doi.org/10.3390/computers10030025 Cite Download
Toyoshima F (2021) Roles and their three facets: A foundational perspective. Applied Ontology 16:161–192. https://doi.org/10.3233/AO-210244 Cite
Ethier J-F, Goyer F, Fabry P, Barton A (2021) The prescription of drug ontology 2.0 (PDRO): More than the sum of its parts. International Journal of Environmental Research and Public Health 18. https://doi.org/10.3390/ijerph182212025 Cite
Wouterlood MA, Malhamé I, Lévesque K, Dayan N, Mahone M, Côté A-M, Cumyn A, Malick M, Sauvé N (2021) Pregnancy‐associated pelvic vein thrombosis: Insights from a multicenter case series. Journal of Thrombosis and Haemostasis 19:1926–1931. https://doi.org/https://doi.org/10.1111/jth.15333 Cite
Trahan M-J, Cumyn A, Cheng MP, McDonald EG, Lapinsky SE, Daneman N, Abenhaim HA, Malhamé I (2021) Physician Perspectives on Including Pregnant Women in Covid-19 Clinical Trials: Time for a Paradigm Change. Ethics & Human Research 43:19–27. https://doi.org/https://doi.org/10.1002/eahr.500107 Cite
Letarte L, Gagnon P, McKay R, Quesnel-Vallée A, Waygood EOD, Lebel A, Vanasse A, Bartlett G, Blais L, Buckeridge D, Choinière M, Hudon C, Lacasse A, Lamarche B, Quesnel-Vallée A, Roberge P, Émond V, Pomey M-P, Benigeri M, Cloutier A-M, Dorais M, Courteau J, Courteau M, Plante S, Cambon P, Giguère A, Leroux I, St-Laurent D, Roy D, Borja J, Néron A, Landry G, Ethier J-F, Dault R, Côté-Marcil M-A, Tremblay P, Quirion S, on behalf of the TorSaDE Cohort Working Group (2021) Examining longitudinal patterns of individual neighborhood deprivation trajectories in the province of Quebec: A sequence analysis application. Social Science & Medicine 288:113695. https://doi.org/https://doi.org/10.1016/j.socscimed.2021.113695 Cite
Camirand Lemyre F, Decrouez G (2021) Nonparametric recursive estimation of the copula. Statistics & Probability Letters 168:108929. https://doi.org/https://doi.org/10.1016/j.spl.2020.108929 Cite Download
Vincenot M, Coulombe-Lévêque A, Sean M, Camirand Lemyre F, Gendron L, Marchand S, Léonard G (2021) Development and Validation of a Predictive Model of Pain Modulation Profile to Guide Chronic Pain Treatment: A Study Protocol. Frontiers in Pain Research 2. https://doi.org/10.3389/fpain.2021.606422 Cite Download
Hardy I, Lloyd A, Morisset A-S, Camirand Lemyre F, Baillargeon J-P, Fraser WD (2021) Healthy for My Baby Research Protocol- a Randomized Controlled Trial Assessing a Preconception Intervention to Improve the Lifestyle of Overweight Women and Their Partners. Frontiers in Public Health 9. https://doi.org/10.3389/fpubh.2021.670304 Cite Download
Purkayastha S, Xiao Y, Jiao Z, Thepumnoeysuk R, Halsey K, Wu J, Tran TML, Hsieh B, Choi JW, Wang D, Vallieres M (2021) Machine Learning-Based Prediction of COVID-19 Severity and Progression to Critical Illness Using CT Imaging and Clinical Data. Korean Journal of Radiology 22:1213. https://doi.org/10.3348/kjr.2020.1104 Cite
Chatterjee A, Vallieres M, Forghani R, Seuntjens J (2021) Investigating the impact of the CT Hounsfield unit range on radiomic feature stability using dual energy CT data. Physica Medica 88:272–277 Cite
Cong H, Peng W, Tian Z, Vallieres M, Chuanpei X, Aijun Z, Benxin Z (2021) FDG-PET/CT Radiomics Models for The Early Prediction of Locoregional Recurrence in Head and Neck Cancer. Current Medical Imaging 17:374–383. https://doi.org/10.2174/1573405616666200712181135 Cite
DeCunha JM, Poole CM, Vallieres M, Torres J, Camilleri-Broët S, Rayes RF, Spicer JD, Enger SA (2021) Development of patient-specific 3D models from histopathological samples for applications in radiation therapy. Physica Medica 81:162–169 Cite
Morin O, Vallieres M, Braunstein S, Ginart JB, Upadhaya T, Woodruff HC, Zwanenburg A, Chatterjee A, Villanueva-Meyer JE, Valdes G, others (2021) An artificial intelligence framework integrating longitudinal electronic health records with real-world data enables continuous pan-cancer prognostication. Nature Cancer 2:709–722 Cite

Chapitres de livres

Nano T, Lafrenière M, Ziemer B, Witztum A, Barrios J, Upadhaya T, Vallieres M, Interian Y, Valdes G, Morin O (2020) Artificial Intelligence in Radiation Oncology. In: The Modern Technology of Radiation Oncology. Jacob Van Dyk, p 522 Cite
Khnaisser C, Hamrouni H, Blumenthal D, Dignös A, Gamper J (2022) Querying Temporal Anomalies in Healthcare Information Systems and Beyond. In: Advances in Databases and Information Systems. Springer International Publishing Cite
Barton A (2020) L'ontologie appliquée : un dialogue entre métaphysique analytique et traitement de l'information. In: Lacroix A (ed) La philosophie pratique : un passage obligé pour penser la société. Presses de l'Université Laval, pp 87–108 Cite

Actes de colloques

Ceccarello M, Dignös A, Gamper J, Khnaisser C (2023) Indexing Temporal Relations for Range-Duration Queries. In: Proceedings of the 35th International Conference on Scientific and Statistical Database Management. Association for Computing Machinery, New York, États-Unis Cite
Goyer F, Fabry P, Barton A, Ethier J-F (2022) An ontology for healthcare systems. In: Proceedings of the 13th International Conference on Biomedical Ontology (ICBO 2022). Ann Arbor, États-Unis Cite
Toyoshima F, Barton A, Fabry P, Ethier J-F (2022) Representing Gender in Ontologies: A Dispositional Perspective. In: Proceedings of the 12th International Conference on Biomedical Ontology (ICBO 2021). CEUR Workshop Proceedings, Bolzano, Italie, pp 1–12 Cite Download
Khnaisser C, Hamrouni H, Blumenthal DB, Dignös A, Gamper J (2022) Querying Temporal Anomalies in Healthcare Information Systems and Beyond [BEST PAPER AWARD]. In: Chiusano S, Cerquitelli T, Wrembel R (eds) Advances in Databases and Information Systems. Springer International Publishing, pp 209–222 Cite
Barton A, Tarbouriech C, Vieu L, Ethier J-F (2022) A Mereological System for Informational Templates. In: CEUR Workshop Proceedings Cite
Fabry P, Goyer F, Barton A, Ethier J-F (2022) An informational perspective on the ontology of services. In: CEUR Workshop Proceedings Cite
Toyoshima F, Barton A, Ethier J-F (2022) Investigating Functions in BFO from the Viewpoint of Extrinsic Dispositions. In: CEUR Workshop Proceedings Cite

Présentations

Camirand Lemyre F, Ethier J-F, Lévesque S, Domingue M-P, Herrmann K (2024) Distributed statistical analysis: a scoping review and examples of operational frameworks adapted to healthcare Cite
Khnaisser C (2023) Modèle de données historicisées pour les systèmes de santé apprenants Cite
Lévesque S, Camirand Lemyre F, Ethier J-F (2023) Inférence distribuée pour les modèles linéaires généralisés Cite
Burgun A (2023) L'IA en santé : de la donnée à la prise de décision Cite
Burgun A (2023) Pédagogie active en santé numérique : regards croisés sur sa mise en œuvre dans le curriculum médical à l'Université de Paris Cité et l'école d'été du GRIIS à l'Université Sherbrooke Cite
Ethier J-F (2023) Intelligence artificielle : êtes-vous prêt à accompagner vos étudiants et vos patients? Cite
Khnaisser C (2022) Querying Temporal Anomalies in Healthcare Information Systems and Beyond Cite
Ménard J-F (2022) Modèles de consentement dans le PL19 : l'exemple de la recherche utilisant des renseignements de santé et de services sociaux Cite
Ethier J-F (2022) La recherche interdisciplinaire et les systèmes de santé apprenant pour améliorer la santé de vos patients Cite

Rapports

Collin J, Deschênes M, Désilets F, Després P, Ethier J-F, Giroux Blanchet S, Frenette C, Carbonneau M, Gagnon M-A, Ganache I, Zawati MH, Loum N, Maclure J (2022) Mériter et renforcer la confiance des citoyens dans la gestion et la valorisation des données de santé : pour une gouvernance transparente et responsable, soucieuse de la dignité des personnes et de l'intérêt public. Comité de travail sur l'accès aux données gouvernementales par le secteur privé et les OBNL de la Commission de l'éthique en science et en technologie du Québec Cite Download
Zwanenburg A, Leger S, Vallieres M, Löck S (2020) Image biomarker standardisation initiative Cite Download
Paprica PA, Maillet DC, Dahl L, Diverty B, Ethier J-F, Gavin F, Katz A, Lix LM, MacDonald D, McDonald T, McGrail K, Quan H, Rowe R, Schull MJ, Street C, Victor JC, Walker J, Wu J, Yada N (2020) Infrastructure de recherche numérique sur la santé des populations : s'appuyer sur un réseau d'apprentissage collaboratif. Réseau de recherche sur les données de santé du Canada (RRDS Canada) Cite

Thèses et mémoires

Madar H (2020) Effets du programme " Agir Sur Sa Santé " sur la qualité des soins des patients à risque ou atteints de maladies chroniques cardiométaboliques dans les Centres de santé et de services sociaux de l'Estrie. Université de Sherbrooke Cite